PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010847-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 228aa    MW: 25543.7 Da    PI: 9.0903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010847-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-055678123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  NNU_010847-RA 56 YTCSFCKREFKSAQALGGHMNVH 78
                   9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-65383No hitNo description
SMARTSM003550.00325678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1775683IPR007087Zinc finger, C2H2
PfamPF139121.9E-65679IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MERNRLMNSM KDSSGLDRID LINSSSNNKV RDSWEYNNGS FGGDMLGGFP WPPRSYTCSF  60
CKREFKSAQA LGGHMNVHRR DRARMRQSPP WEVQCSQNKP NPNPNPSPNV DFLSSSHSTR  120
LPSFTYTFPS LLSPSLACFS SSPTSASSAE LKTRTGSLLD ASCSSKGGDT AQSRTMKPRF  180
GVRELKGLRQ QDECKLLKTA EIVRLDLEIG LCRESKEDLD LELRLGYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-145178229superman protein
2l1o_A9e-145178229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262486.11e-169PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM9WE191e-62M9WE19_POPEU; SUP1
STRINGVIT_05s0049g00070.t012e-56(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-34C2H2 family protein